neuralib.atlas.brainrender.roi_rst
- class neuralib.atlas.brainrender.roi_rst.RoisReconstructor[source]
- DESCRIPTION: str = 'For labelled rois reconstruction from 2dccf pipeline'
parser description.
- only_roi_region: str
only show rois in region(s)
- region_col: str | None
if None, auto infer, and check the lowest merge level contain all the regions specified
- load_merge_points(default_rois=None)[source]
load from 2dccf pipeline, with different channels of fluorescence labelled points
- Parameters:
default_rois (ndarray | None) – Array with xyz(ap, dv, ml). Array[float, [N, 3]]. i.e., prelocate roi, reference points …
- Returns:
- Return type:
list[list[ndarray] | ndarray]