neuralib.dashboard.view_brain

class neuralib.dashboard.view_brain.AbstractBrainView[source]

render_brain_slice: GlyphRenderer

__init__()[source]

data_brain_slice: ColumnDataSource

property width: float | None

property height: float | None

plot(fig, palette='Greys256')[source]

plot data in figure.

Parameters:

figure – Figure.
kwargs – plotting parameters.
fig (figure)

abstract property brain_image: ndarray

update(x=0, y=0)[source]

update the plot

Parameters:

x (float)
y (float)

class neuralib.dashboard.view_brain.BrainView[source]

__init__()[source]

property brain_image: ndarray

class neuralib.dashboard.view_brain.TiffBrainView[source]

__init__(file)[source]

Parameters:: file (Path)

property offset: int

property brain_image: ndarray

class neuralib.dashboard.view_brain.AtlasBrainView[source]

PLANE: alias of Literal[‘coronal’, ‘sagittal’, ‘transverse’]

__init__(source, check_latest=False, plane='coronal')[source]

Parameters:

source (str)
plane (Literal['coronal', 'sagittal', 'transverse'])

property n_ap: int

property n_dv: int

property n_ml: int

property plane: Literal['coronal', 'sagittal', 'transverse']

property n_frame: int

property width_n: int

property height_n: int

property width: float

property height: float

property offset: int

property offset_w: int

property offset_h: int

property offset_matrix: ndarray

gen_offset_matrix(h, v)[source]

Parameters:

h (int) – horizontal plane diff to the center. right side positive.
v (int) – vertical plane diff to the center. bottom side positive.

Returns:

(H, W) array

Return type:

ndarray

brain_slice(offset)[source]

Parameters:: offset (int | ndarray)
Return type:: ndarray

property brain_image: ndarray