neuralib.scanner.core
- neuralib.scanner.core.SceneIdx
0-base scan position
- neuralib.scanner.core.DimCode
Dimension string code
alias of
str
- class neuralib.scanner.core.AbstractConfocalScanner[source]
ABC for the confocal image data
- n_scenes: int
positions scan
- meta: dict[str, Any]
metadata dict
- abstract classmethod load(filepath)[source]
- Parameters:
filepath (str | Path | bytes | BinaryIO | BufferedIOBase | BufferedReader)
- abstract property width: dict[int, int]
X
- abstract property height: dict[int, int]
Y
- abstract property n_channels: dict[int, int]
number of fluorescence channels. C
- abstract property n_zstacks: dict[int, int]
number of stacks in z axis. Z
- abstract get_dim_code()[source]
get the DimCode
Dimension parameters (DimCode):
V - view
H - phase
I - illumination
S - scene
R - rotation
T - time
C - channel
Z - z plane (height)
M - mosaic tile, mosaic images only
Y - image height
X - image width
A - samples, BGR/RGB images only
- Return type:
DIMCODE