neuralib.atlas.brainrender.roi
- class neuralib.atlas.brainrender.roi.RoiRenderCLI[source]
- DESCRIPTION: str = 'For labelled rois reconstruction from 2dccf pipeline'
parser description.
- DEFAULT_ROI_COLORS = ['orange', 'magenta', 'dimgray']
- GROUP_ROIS = 'ROI View Option'
- roi_region: str | tuple[str, ...]
only show rois in region(s)
- radius: float
each roi radius
- roi_alpha: float
region alpha value
- roi_colors: str | tuple[str, ...]
colors of rois per region
- region_col: str | None
if None, auto infer, and check the lowest merge level contain all the regions specified
- inverse_lut: bool
inverse right/left maps to ipsi/contra hemisphere look up table
- source_order: tuple[str, ...] | None
source order to follow the roi_colors
- GROUP_ROIS_LOAD = 'ROI load Option'
- classifier_file: Path | None
csv output file from allenccf
- file: list[Path] | None
points file as ‘npy’ or ‘csv’