neuralib.imaging.widefield.align

class neuralib.imaging.widefield.align.NapariAlignmentOptions[source]

DESCRIPTION: str = 'View the video sequences and top view of dorsal cortex using napari': parser description.

sequence_path: str: file path for the video sequence

reference_path: str | None: reference image (e.g., bright-field)

dorsal_map_path: str | None: dorsal map file, If None then use default

color: bool: alignment map with color

run()[source]: called when all argument attributes are set