neuralib.dashboard.view_brain.TiffBrainView

class neuralib.dashboard.view_brain.TiffBrainView[source]

Bases: AbstractBrainView

__init__(file)[source]
Parameters:

file (Path)

property offset: int
property brain_image: ndarray
property height: float | None
list_renders(pattern=None, recursive=False)

list all renders for those name contain pattern.

Parameters:

  • pattern (str | None) – str in attribute name

  • recursive (bool) – recursive find all renders from ViewComponent attributes.

Returns:

Return type:

list[GlyphRenderer]

plot(fig, palette='Greys256')

plot data in figure.

Parameters:

  • fig (figure) – Figure.

  • kwargs – plotting parameters.

set_visible(visible, pattern=None)

Set the visible state of renders for those name contain pattern. It is a recursive function that it also update the renders inside the ViewComponent attributes.

Parameters:

  • visible (bool)

  • pattern (str | None) – str in attribute name

update(x=0, y=0)

update the plot

Parameters:

  • x (float)

  • y (float)

property width: float | None
data_brain_slice: ColumnDataSource
render_brain_slice: GlyphRenderer