Welcome to NeuraLib’s documentation!

Utility tools for system neuroscience research, including Open Source Wrapper or Parser

Modules including:

  • argp: Use argparse as dataclass field

  • atlas: Whole brain, slice view visualization and rois classification

  • bokeh_model: Interactive dashboard visualization

  • calimg: Module for 2photon calcium imaging acquisition and result parsing

  • persistence: Module for caching the analyzed results (i.e., concatenation for statistic purpose)

  • plot: Module for general plotting purpose

  • scanner: Module for parsing Zeiss confocal scanning data

  • segmentation: Module for cellular segmentation

  • stimpy: Tools and Result parser for visual-guided behavior dataset (lab internal use)

  • tools: other small tools…

  • wrapper: Module for other open-source tools wrapper, including deeplabcut, facemap, rastermap

  • util: …

API Reference

Indices and tables